Publications

2016

2015

O’Reilly, Christian, Jonathan Godbout, Julie Carrier, and Jean-Marc Lina. (2015) 2015. “Combining Time-Frequency and Spatial Information for the Detection of Sleep Spindles.”. Frontiers in Human Neuroscience 9: 70. https://doi.org/10.3389/fnhum.2015.00070.

EEG sleep spindles are short (0.5-2.0 s) bursts of activity in the 11-16 Hz band occurring during non-rapid eye movement (NREM) sleep. This sporadic activity is thought to play a role in memory consolidation, brain plasticity, and protection of sleep integrity. Many automatic detectors have been proposed to assist or replace experts for sleep spindle scoring. However, these algorithms usually detect too many events making it difficult to achieve a good tradeoff between sensitivity (Se) and false detection rate (FDr). In this work, we propose a semi-automatic detector comprising a sensitivity phase based on well-established criteria followed by a specificity phase using spatial and spectral criteria. In the sensitivity phase, selected events are those which amplitude in the 10-16 Hz band and spectral ratio characteristics both reject a null hypothesis (p < 0.1) stating that the considered event is not a spindle. This null hypothesis is constructed from events occurring during rapid eye movement (REM) sleep epochs. In the specificity phase, a hierarchical clustering of the selected candidates is done based on events' frequency and spatial position along the anterior-posterior axis. Only events from the classes grouping most (at least 80%) spindles scored by an expert are kept. We obtain Se = 93.2% and FDr = 93.0% in the first phase and Se = 85.4% and FDr = 86.2% in the second phase. For these two phases, Matthew's correlation coefficients are respectively 0.228 and 0.324. Results suggest that spindles are defined by specific spatio-spectral properties and that automatic detection methods can be improved by considering these features.

O’Reilly, Christian, and Tore Nielsen. (2015) 2015. “Automatic Sleep Spindle Detection: Benchmarking With Fine Temporal Resolution Using Open Science Tools.”. Frontiers in Human Neuroscience 9: 353. https://doi.org/10.3389/fnhum.2015.00353.

Sleep spindle properties index cognitive faculties such as memory consolidation and diseases such as major depression. For this reason, scoring sleep spindle properties in polysomnographic recordings has become an important activity in both research and clinical settings. The tediousness of this manual task has motivated efforts for its automation. Although some progress has been made, increasing the temporal accuracy of spindle scoring and improving the performance assessment methodology are two aspects needing more attention. In this paper, four open-access automated spindle detectors with fine temporal resolution are proposed and tested against expert scoring of two proprietary and two open-access databases. Results highlight several findings: (1) that expert scoring and polysomnographic databases are important confounders when comparing the performance of spindle detectors tested using different databases or scorings; (2) because spindles are sparse events, specificity estimates are potentially misleading for assessing automated detector performance; (3) reporting the performance of spindle detectors exclusively with sensitivity and specificity estimates, as is often seen in the literature, is insufficient; including sensitivity, precision and a more comprehensive statistic such as Matthew's correlation coefficient, F1-score, or Cohen's κ is necessary for adequate evaluation; (4) reporting statistics for some reasonable range of decision thresholds provides a much more complete and useful benchmarking; (5) performance differences between tested automated detectors were found to be similar to those between available expert scorings; (6) much more development is needed to effectively compare the performance of spindle detectors developed by different research teams. Finally, this work clarifies a long-standing but only seldomly posed question regarding whether expert scoring truly is a reliable gold standard for sleep spindle assessment.